To Make the berry compote for the Parfaits: Combine berries, water, sugar, and salt in a small saucepan. Heat over medium heat until berries begin to break down and a spoon or spatula leaves a clear path on the bottom of your pot, 8 to 10 minutes. Remove from heat, stir in lemon zest, and let cool for 10 minutes.
Build your Parfaits: Add 1/3 cup yogurt to the bottom of each serving glass. Top each with a 1/4 cup of the berry mixture, 1/4 cup of granola, another 1/3 cup of yogurt, and the remaining berry compote.